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LOC4345873 serine/threonine protein kinase OSK4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345873, updated on 3-Dec-2024
Gene symbol
LOC4345873
Gene description
serine/threonine protein kinase OSK4-like
Locus tag
OSNPB_080484600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OSK4; OSK24; SNRK1B; OsJ_27714
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See LOC4345873 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24082102..24087244)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23942242..23947376)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345871 Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like Neighboring gene trihelix transcription factor ASIL2 Neighboring gene uncharacterized LOC4345875

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
serine/threonine protein kinase OSK4
Names
OSNPB_080484600
Os08g0484600
P0419H09.18
SNF1-related kinase 1B
SUCROSE NON-FERMENTING-1 related protein kinase 1B
Serine/threonine protein kinase OSK24
SnRK1b protein kinase
carbon catabolite-derepressing protein kinase
serine/threonine protein kinase(OSK4)
NP_001409536.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422607.1 → NP_001409536.1  serine/threonine protein kinase OSK4

    Status: VALIDATED

    Source sequence(s)
    AK072723, CI618415
    UniProtKB/Swiss-Prot
    B8BBT7, Q852Q1, Q9ZRJ3
    UniProtKB/TrEMBL
    Q40740

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    24082102..24087244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q852Q1.1 GenPept UniProtKB/Swiss-Prot:Q852Q1

Gene LinkOut

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Molecular Biology Databases
Research Materials