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LOC4345313 general transcription and DNA repair factor IIH subunit TFB1-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345313, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4345313
Gene description
general transcription and DNA repair factor IIH subunit TFB1-1
Locus tag
OSNPB_080338200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 14.3), flowers (RPKM 13.3) and 6 other tissues See more
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Genomic context

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See LOC4345313 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15279589..15288356, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15203196..15211975, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene L10-interacting MYB domain-containing protein Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene uncharacterized LOC4345314 Neighboring gene uncharacterized LOC9269071

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH subunit TFB1-1
Names
Os08g0338200
P0702G08.11
probable RNA polymerase II transcription factor B subunit 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    15279589..15288356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795489.3 → XP_015650975.1  general transcription and DNA repair factor IIH subunit TFB1-1

    UniProtKB/TrEMBL
    B8B9V0, B9G0F0, Q0J6B8, Q6ZC85
    Conserved Domains (1) summary
    pfam03909
    Location:208 → 256
    BSD; BSD domain

RNA

  1. XR_001548489.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials