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LOC4345285 exopolygalacturonase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345285, updated on 16-Jun-2026
Gene symbol
LOC4345285
Gene description
exopolygalacturonase
Locus tag
OSNPB_080327200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4345285 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14471960..14474338, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14404194..14406738, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345283 Neighboring gene probable galacturonosyltransferase 4 Neighboring gene enoyl-[acyl-carrier-protein] reductase [NADH] 1, chloroplastic-like Neighboring gene uncharacterized LOC136351302

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
exopolygalacturonase
Names
Os08g0327200
P0670E08.10
putative polygalacturonase

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    14471960..14474338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793937.3 → XP_015649423.1  exopolygalacturonase

    UniProtKB/TrEMBL
    B7EGW5, Q6Z8X3
    Conserved Domains (2) summary
    PLN02188
    Location:1 → 407
    PLN02188; polygalacturonase/glycoside hydrolase family protein
    pfam00295
    Location:66 → 398
    Glyco_hydro_28; Glycosyl hydrolases family 28
Nucleotide Protein
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