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LOC4345261 fasciclin-like arabinogalactan protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345261, updated on 12-Jul-2024
Gene symbol
LOC4345261
Gene description
fasciclin-like arabinogalactan protein 1
Locus tag
OSNPB_080321000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0048E12.2
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See LOC4345261 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14052455..14055424, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13985120..13988215, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351341 Neighboring gene uncharacterized LOC4345260 Neighboring gene uncharacterized LOC107282040 Neighboring gene uncharacterized LOC107282023

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
fasciclin-like arabinogalactan protein 1
Names
Os08g0321000
P0005C02.108
putative fasciclin-like arabinogalactan-protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    14052455..14055424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795277.3 → XP_015650763.1  fasciclin-like arabinogalactan protein 1

    UniProtKB/TrEMBL
    A2YTW2, A3BRV6, Q0J6G9, Q8H3S1
    Conserved Domains (1) summary
    pfam02469
    Location:200 → 331
    Fasciclin; Fasciclin domain
Nucleotide Protein
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