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LOC4345200 threonine--tRNA ligase, mitochondrial 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345200, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4345200
Gene description
threonine--tRNA ligase, mitochondrial 1
Locus tag
OSNPB_080295300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ThrRS; OJ1212_C09.6; OJ1705_A03.38
Expression
Ubiquitous expression in flower buds (RPKM 48.0), roots before flowering (RPKM 42.3) and 6 other tissues See more
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Genomic context

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See LOC4345200 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (11887867..11897477, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like domain-containing protein CIP73 Neighboring gene protein SPA1-RELATED 4-like Neighboring gene disease resistance protein RGA2 Neighboring gene putative disease resistance protein RGA3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in threonyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
threonine--tRNA ligase, mitochondrial 1
Names
Os08g0295300
putative threonyl-tRNA synthetase
threonyl-tRNA synthetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    11887867..11897477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795221.1 → XP_015650707.1  threonine--tRNA ligase, mitochondrial 1

    UniProtKB/TrEMBL
    A0A0P0XE22, C8TFD5, Q6Z0N5
    Conserved Domains (1) summary
    PLN02908
    Location:64 → 745
    PLN02908; threonyl-tRNA synthetase
Nucleotide Protein
Heading Accession and Version

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