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LOC4344971 26S proteasome non-ATPase regulatory subunit 1 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344971, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344971
Gene description
26S proteasome non-ATPase regulatory subunit 1 homolog A
Locus tag
OSNPB_080224700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsRPN2a; P0494D11.3
Expression
Ubiquitous expression in flower buds (RPKM 29.0), flowers (RPKM 26.9) and 6 other tissues See more
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Genomic context

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See LOC4344971 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (7643138..7648538)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (7591556..7597014)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic Neighboring gene glucan endo-1,3-beta-glucosidase 6 Neighboring gene ethanolamine-phosphate cytidylyltransferase Neighboring gene uncharacterized LOC136351363

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in proteasome storage granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 1 homolog A
Names
26S proteasome regulatory particle non-ATPase subunit2a
Os08g0224700
putative proteasome 26S non-ATPase subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    7643138..7648538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794885.3 → XP_015650371.1  26S proteasome non-ATPase regulatory subunit 1 homolog A

    UniProtKB/TrEMBL
    A0A0P0XDC5, A2YSI1, B9FZN8, Q6Z921
    Conserved Domains (2) summary
    COG5116
    Location:13 → 946
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:574 → 597
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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