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LOC4344894 obg-like ATPase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344894, updated on 6-Sep-2025
Gene symbol
LOC4344894
Gene description
obg-like ATPase 1
Locus tag
OSNPB_080199300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
YchF1; OsYchF1; OsJ_26368
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Try the new Transcripts and proteins table
See LOC4344894 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5797388..5802437)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5746726..5751789)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein At3g59170 Neighboring gene uncharacterized LOC112936163 Neighboring gene acyl-[acyl-carrier-protein] desaturase 6, chloroplastic-like Neighboring gene uncharacterized LOC9269405

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice. Cheung MY, et al. Biochem J, 2020 Oct 30. PMID 32955089
  2. An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein. Cheung MY, et al. J Biol Chem, 2010 Nov 26. PMID 20876569, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice.
    Title: A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice.
  2. GTPase/ATPase activities and RNA binding capacity of YchF(BAD03576) is regulated by GAP1(BAD15699).
    Title: An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
obg-like ATPase 1
Names
OSJNBb0094P23.28
Os08g0199300
Ribosome-binding ATPase YchF
putative GTP-binding protein
NP_001390453.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403524.1 → NP_001390453.1  obg-like ATPase 1

    Status: VALIDATED

    Source sequence(s)
    CI065185, CI517596, CI564221, CI594591, CI682578, D46475
    UniProtKB/Swiss-Prot
    A0A0P0XCP6, B8BBN7, Q0J7E5, Q6Z1J6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    5797388..5802437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6Z1J6.1 GenPept UniProtKB/Swiss-Prot:Q6Z1J6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials