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LOC4344685 DNA topoisomerase 1 beta [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344685, updated on 3-Jun-2019

Summary

Gene symbol
LOC4344685
Gene description
DNA topoisomerase 1 beta
Locus tag
OSNPB_080154600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1066_B03.125
Expression
Ubiquitous expression in roots after flowering (RPKM 31.0), flower buds (RPKM 28.6) and 6 other tissues See more
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Genomic context

See LOC4344685 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3136760..3142892)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene monocopper oxidase-like protein SKU5 Neighboring gene transaldolase Neighboring gene sm-like protein LSM2 Neighboring gene small nucleolar RNA snoR134 Neighboring gene oxysterol-binding protein-related protein 2A

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General gene information

Homology

  • Homologs of the LOC4344685 gene: The LOC4344685 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
DNA topoisomerase 1 beta
Names
Os08g0154600
putative DNA topoisomerase I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    3136760..3142892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794626.2XP_015650112.1  DNA topoisomerase 1 beta

    UniProtKB/TrEMBL
    Q84ZL5
    Conserved Domains (4) summary
    smart00435
    Location:513889
    TOPEUc; DNA Topoisomerase I (eukaryota)
    pfam01028
    Location:587783
    Topoisom_I; Eukaryotic DNA topoisomerase I, catalytic core
    pfam02919
    Location:372584
    Topoisom_I_N; Eukaryotic DNA topoisomerase I, DNA binding fragment
    pfam14370
    Location:847914
    Topo_C_assoc; C-terminal topoisomerase domain
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