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LOC4344685 DNA topoisomerase 1 beta [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344685, updated on 9-Aug-2018

Summary

Gene symbol
LOC4344685
Gene description
DNA topoisomerase 1 beta
Locus tag
OSNPB_080154600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1066_B03.125
Expression
Ubiquitous expression in roots after flowering (RPKM 31.0), flower buds (RPKM 28.6) and 6 other tissues See more

Genomic context

See LOC4344685 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3136760..3142892)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene monocopper oxidase-like protein SKU5 Neighboring gene transaldolase Neighboring gene sm-like protein LSM2 Neighboring gene small nucleolar RNA snoR134 Neighboring gene oxysterol-binding protein-related protein 2A

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA topoisomerase type I activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA topological change IEA
Inferred from Electronic Annotation
more info
 
DNA unwinding involved in DNA replication IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA topoisomerase 1 beta
Names
Os08g0154600
putative DNA topoisomerase I

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    3136760..3142892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794626.2XP_015650112.1  DNA topoisomerase 1 beta

    UniProtKB/TrEMBL
    Q84ZL5
    Conserved Domains (4) summary
    smart00435
    Location:513889
    TOPEUc; DNA Topoisomerase I (eukaryota)
    pfam01028
    Location:587783
    Topoisom_I; Eukaryotic DNA topoisomerase I, catalytic core
    pfam02919
    Location:372584
    Topoisom_I_N; Eukaryotic DNA topoisomerase I, DNA binding fragment
    pfam14370
    Location:847914
    Topo_C_assoc; C-terminal topoisomerase domain
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