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LOC4344579 large ribosomal subunit protein eL37z [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344579, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344579
Gene description
large ribosomal subunit protein eL37z
Locus tag
OSNPB_080128500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1163_G08.42
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Genomic context

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See LOC4344579 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1630712..1632883)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1619128..1621401)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344576 Neighboring gene actin-related protein 3 Neighboring gene small nucleolar RNA Z199 Neighboring gene small nucleolar RNA R64/Z200 family Neighboring gene small nucleolar RNA Z199 Neighboring gene uncharacterized LOC112936185 Neighboring gene BTB/POZ and MATH domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein eL37z
Names
60S ribosomal protein L37-1
Os08g0128500
P0582D05.141

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    1630712..1632883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792812.3 → XP_015648298.1  large ribosomal subunit protein eL37z

    UniProtKB/TrEMBL
    A0A5S6R728, B8BAF5, B9FYW7, Q0J889
    Conserved Domains (1) summary
    PTZ00073
    Location:1 → 91
    PTZ00073; 60S ribosomal protein L37; Provisional
Nucleotide Protein
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