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LOC4344474 uncharacterized LOC4344474 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344474, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4344474
Gene description
uncharacterized LOC4344474
Locus tag
OSNPB_080109900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 49.8), leaves after flowering (RPKM 42.9) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (519117..523622, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (513715..518283, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276093 Neighboring gene serine/threonine-protein kinase-like protein CCR4 Neighboring gene putative methylesterase 14, chloroplastic Neighboring gene uncharacterized LOC4344476

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4344474
Names
Os08g0109900
P0007D08.22
putative survival motor neuron domain containing 1; splicing factor 30, survival of motor neuron-related
survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    519117..523622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795413.3 → XP_015650899.1  uncharacterized protein LOC4344474 isoform X1

    UniProtKB/TrEMBL
    A2YQI7, A3BNY3, Q0J8I7, Q6ZC63
    Conserved Domains (2) summary
    smart00333
    Location:95 → 149
    TUDOR; Tudor domain
    PLN00104
    Location:59 → 208
    PLN00104; MYST -like histone acetyltransferase; Provisional

  2. XM_066303576.1 → XP_066159673.1  uncharacterized protein LOC4344474 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XB85

  3. XM_066303577.1 → XP_066159674.1  uncharacterized protein LOC4344474 isoform X3

    UniProtKB/TrEMBL
    A0A0P0XB85
Nucleotide Protein
Heading Accession and Version

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