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LOC4344429 tubby-like F-box protein 12 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344429, updated on 3-Dec-2024
Gene symbol
LOC4344429
Gene description
tubby-like F-box protein 12
Locus tag
OSNPB_080103300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TULP2; OsTLP2; TULP12; OsTLP12; OsJ_25735
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Try the new Transcripts and proteins table
See LOC4344429 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (191655..195528)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (186949..191776)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein MKS1 Neighboring gene serine/threonine-protein kinase STY17 Neighboring gene uncharacterized LOC4344428 Neighboring gene protein S-acyltransferase 8 Neighboring gene PI-PLC X domain-containing protein At5g67130

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
tubby-like F-box protein 12
Names
F-box and tubby domain-containing protein
LOC_Os08g01290
P0015C07.29
Tubby-like F-box protein 2
putative chain A, C-terminal domain of mouse brain tubby protein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422372.1 → NP_001409301.1  tubby-like F-box protein 12

    Status: VALIDATED

    Source sequence(s)
    AK100078, AK104486, CI591414
    UniProtKB/Swiss-Prot
    B9FYN0, Q69U54
    UniProtKB/TrEMBL
    B8B9Y3

  2. NM_001422373.1 → NP_001409302.1  tubby-like F-box protein 12

    Status: VALIDATED

    Source sequence(s)
    AK100078, AK104486, CI591414, CI622424
    UniProtKB/Swiss-Prot
    B9FYN0, Q69U54
    UniProtKB/TrEMBL
    B8B9Y3

  3. NM_001422374.1 → NP_001409303.1  tubby-like F-box protein 12

    Status: VALIDATED

    Source sequence(s)
    AK100078, AK104486, CI591414, CI626332
    UniProtKB/Swiss-Prot
    B9FYN0, Q69U54
    UniProtKB/TrEMBL
    B8B9Y3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    191655..195528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794601.3 → XP_015650087.1  tubby-like F-box protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XAX1
    Conserved Domains (2) summary
    pfam01167
    Location:53 → 374
    Tub; Tub family
    pfam12937
    Location:13 → 33
    F-box-like; F-box-like

  2. XM_066312830.1 → XP_066168927.1  tubby-like F-box protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XAX1

  3. XM_066312831.1 → XP_066168928.1  tubby-like F-box protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XAX1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69U54.1 GenPept UniProtKB/Swiss-Prot:Q69U54

Gene LinkOut

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Research Materials