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LOC4344399 two-component response regulator-like PRR37 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344399, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4344399
Gene description
two-component response regulator-like PRR37
Locus tag
OSNPB_070695100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HD2; DTH7; PRR37; OsPRR37
Expression
Broad expression in leaves before flowering (RPKM 55.7), roots after flowering (RPKM 47.0) and 6 other tissues See more
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Genomic context

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See LOC4344399 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29851118..29863628)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29616704..29629187)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein RETARDED ROOT GROWTH, mitochondrial Neighboring gene uncharacterized LOC136357469 Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene protein NETWORKED 2D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice. Liu C, et al. Plant Cell Environ, 2018 Mar. PMID 29314052
  2. OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice. Liu C, et al. Sci Rep, 2015 Aug 4. PMID 26238949, Free PMC Article
  3. Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Murakami M, et al. Biosci Biotechnol Biochem, 2005 Feb. PMID 15725670
  4. The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Murakami M, et al. Plant Cell Physiol, 2003 Nov. PMID 14634161
  5. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OsPRR37 is a circadian clock gene.OsPRR37 regulates rice flowering time.
    Title: OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice.
  2. Two general combining ability loci associate with PRR37 and Ghd7.
    Title: OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator-like PRR37
Names
LOC_Os07g49460
P0627E10.21
protein DAYS TO HEADING 7
protein HEADING DATE 2
pseudo-response regulator 37
putative pseudo-response regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403302.1 → NP_001390231.1  two-component response regulator-like PRR37

    Status: VALIDATED

    Source sequence(s)
    AK059514, AK066112, CB683386, CI586284, CI598183
    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

  2. NM_001403303.1 → NP_001390232.1  two-component response regulator-like PRR37

    Status: VALIDATED

    Source sequence(s)
    AK059514, AK066112, CB683386
    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

  3. NM_001403304.1 → NP_001390233.1  two-component response regulator-like PRR37

    Status: VALIDATED

    Source sequence(s)
    AK059514, AK066112, CB683386, CI580217
    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29851118..29863628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791122.3 → XP_015646608.1  two-component response regulator-like PRR37 isoform X2

    UniProtKB/TrEMBL
    A0A076PUC2
    Conserved Domains (2) summary
    cd00156
    Location:65 → 180
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:680 → 722
    CCT; CCT motif

  2. XM_066312015.1 → XP_066168112.1  two-component response regulator-like PRR37 isoform X2

  3. XM_066312012.1 → XP_066168109.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

  4. XM_066312021.1 → XP_066168118.1  two-component response regulator-like PRR37 isoform X3

  5. XM_015791118.3 → XP_015646604.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
    UniProtKB/TrEMBL
    A0A076PUC2
    Conserved Domains (2) summary
    cd00156
    Location:65 → 180
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:682 → 724
    CCT; CCT motif

  6. XM_066312020.1 → XP_066168117.1  two-component response regulator-like PRR37 isoform X2

  7. XM_015791117.3 → XP_015646603.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
    UniProtKB/TrEMBL
    A0A076PUC2
    Conserved Domains (2) summary
    cd00156
    Location:65 → 180
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:682 → 724
    CCT; CCT motif

  8. XM_066312016.1 → XP_066168113.1  two-component response regulator-like PRR37 isoform X2

  9. XM_066312013.1 → XP_066168110.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

  10. XM_066312022.1 → XP_066168119.1  two-component response regulator-like PRR37 isoform X3

  11. XM_015791119.3 → XP_015646605.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
    UniProtKB/TrEMBL
    A0A076PUC2
    Conserved Domains (2) summary
    cd00156
    Location:65 → 180
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:682 → 724
    CCT; CCT motif

  12. XM_066312017.1 → XP_066168114.1  two-component response regulator-like PRR37 isoform X2

  13. XM_066312018.1 → XP_066168115.1  two-component response regulator-like PRR37 isoform X2

  14. XM_066312014.1 → XP_066168111.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

  15. XM_066312023.1 → XP_066168120.1  two-component response regulator-like PRR37 isoform X3

  16. XM_015791121.3 → XP_015646607.1  two-component response regulator-like PRR37 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
    UniProtKB/TrEMBL
    A0A076PUC2
    Conserved Domains (2) summary
    cd00156
    Location:65 → 180
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam06203
    Location:682 → 724
    CCT; CCT motif

  17. XM_066312019.1 → XP_066168116.1  two-component response regulator-like PRR37 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0D3B6.1 GenPept UniProtKB/Swiss-Prot:Q0D3B6

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