LOC4344248 probable histone-arginine methyltransferase CARM1 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4344248
Gene description: probable histone-arginine methyltransferase CARM1
Locus tag: OSNPB_070671700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: CARM1; PRMT4; OsJ_25531
Expression: Ubiquitous expression in roots before flowering (RPKM 24.3), leaves before flowering (RPKM 23.7) and 6 other tissues See more
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Genomic context

Location:: chromosome: 7

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (28402318..28409557)

Chromosome 7 - NC_029262.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein-arginine N-methyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in peptidyl-arginine methylation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable histone-arginine methyltransferase CARM1

Names: LOC_Os07g47500; P0470D12.124; Protein arginine N-methyltransferase 4; putative protein arginine N-methyltransferase 4

XP_015647686.1

EC 2.1.1.319

XP_015647687.1

EC 2.1.1.319

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422281.1 → NP_001409210.1 probable histone-arginine methyltransferase CARM1 isoform 1

Status: VALIDATED

Source sequence(s)

AK065980, CI131352
NM_001422282.1 → NP_001409211.1 probable histone-arginine methyltransferase CARM1 isoform 2

Status: VALIDATED

Source sequence(s)

AK065980

UniProtKB/Swiss-Prot

A2YPT7, A3BNA6, B7EBL4, B8B5U5, Q7XI75

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029262.1 Reference IRGSP-1.0 Primary Assembly

Range

28402318..28409557

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015792201.2 → XP_015647687.1 probable histone-arginine methyltransferase CARM1 isoform X2

UniProtKB/Swiss-Prot

Q7XI75

Conserved Domains (1) summary

cd02440
Location:195 → 295

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
XM_015792200.2 → XP_015647686.1 probable histone-arginine methyltransferase CARM1 isoform X1

Conserved Domains (1) summary

cd02440
Location:195 → 295

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...