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LOC4344046 1-Cys peroxiredoxin B-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344046, updated on 9-Aug-2018

Summary

Gene symbol
LOC4344046
Gene description
1-Cys peroxiredoxin B-like
Locus tag
OSNPB_070638400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_024298; OJ1340_C08.108
Expression
Biased expression in roots before flowering (RPKM 3.7), mature seeds (RPKM 2.6) and 2 other tissues See more

Genomic context

See LOC4344046 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26551667..26552983)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344044 Neighboring gene 1-Cys peroxiredoxin A-like Neighboring gene dirigent protein 5 Neighboring gene peroxidase 2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
1-Cys peroxiredoxin B
Names
1-Cys Prx B
LOC_Os07g44440
Os07g0638400
Thioredoxin peroxidase B
putative RAB24 protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    26551667..26552983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789701.2XP_015645187.1  1-Cys peroxiredoxin B

    UniProtKB/Swiss-Prot
    P0C5D1
    Conserved Domains (2) summary
    COG0450
    Location:4197
    AhpC; Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms]
    cd03016
    Location:6218
    PRX_1cys; Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by ...
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