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LOC4343910 sucrose synthase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343910, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4343910
Gene description
sucrose synthase 3-like
Locus tag
OSNPB_070616800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RSs3; SUS3; RSUS3; OsSUS3; OsJ_25133
Expression
Biased expression in milk grains (RPKM 204.2), flower buds (RPKM 22.4) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25429550..25435142)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like Neighboring gene 40S ribosomal protein Sa-2 Neighboring gene uncharacterized LOC107277036 Neighboring gene uncharacterized LOC4343911 Neighboring gene ethylene-responsive transcription factor 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. New insight into the catalytic properties of rice sucrose synthase. Huang YC, et al. Plant Mol Biol, 2016 Jan. PMID 26520834
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 3
Names
B1056G08.118
LOC_Os07g42490
P0552F09.101
Sucrose-UDP glucosyltransferase 3
sucrose synthase 3 (Sucrose-UDP glucosyltransferase 3)
XP_015644807.1
XP_025883042.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403157.1 → NP_001390086.1  sucrose synthase 3

    Status: VALIDATED

    Source sequence(s)
    AK100306, CI522638, CI740610
    UniProtKB/Swiss-Prot
    A0A0P0X8V1, H6TFZ2, Q0D4N1, Q43009, Q8GS23

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25429550..25435142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789321.2 → XP_015644807.1  sucrose synthase 3

    UniProtKB/Swiss-Prot
    Q43009
    Conserved Domains (1) summary
    PLN00142
    Location:4 → 816
    PLN00142; sucrose synthase

  2. XM_026027257.1 → XP_025883042.1  sucrose synthase 3

    UniProtKB/Swiss-Prot
    A0A0P0X8V1, H6TFZ2, Q0D4N1, Q43009, Q8GS23
    UniProtKB/TrEMBL
    A2YNQ2
    Conserved Domains (1) summary
    PLN00142
    Location:4 → 816
    PLN00142; sucrose synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43009.2 GenPept UniProtKB/Swiss-Prot:Q43009

Gene LinkOut

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Molecular Biology Databases