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LOC4343753 protein SHORT-ROOT 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343753, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4343753
Gene description
protein SHORT-ROOT 1-like
Locus tag
OSNPB_070586900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SHR1; OsSHR1; OsGRAS-38; OsJ_24926; OJ1047_C01.1; OJ1113_E01.116
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Genomic context

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See LOC4343753 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23868300..23871102)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939712 Neighboring gene GDSL esterase/lipase At4g10955 Neighboring gene uncharacterized LOC4343754 Neighboring gene arabinosyltransferase RRA2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice. Henry S, et al. Dev Biol, 2017 May 1. PMID 28263767
  2. A plausible mechanism, based upon Short-Root movement, for regulating the number of cortex cell layers in roots. Wu S, et al. Proc Natl Acad Sci U S A, 2014 Nov 11. PMID 25352666, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis thaliana SHR gene, rice OsSHR1 and OsSHR2, could complement the A. thaliana shr mutant.
    Title: SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in asymmetric cell division IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in radial pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SHORT-ROOT 1
Names
GRAS family protein 38
LOC_Os07g39820
short-root protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422248.1 → NP_001409177.1  protein SHORT-ROOT 1

    Status: VALIDATED

    Source sequence(s)
    AK120959, AP014963, CA756350, CI191099, CI233389, CI763418
    UniProtKB/Swiss-Prot
    A0A0P0X8C3, A3BLN3, B7F6J7, B9FY58, Q0D526, Q8H2X8

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23868300..23871102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790005.2 → XP_015645491.1  protein SHORT-ROOT 1

    UniProtKB/Swiss-Prot
    Q8H2X8
    Conserved Domains (1) summary
    pfam03514
    Location:194 → 601
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H2X8.2 GenPept UniProtKB/Swiss-Prot:Q8H2X8

Gene LinkOut

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Molecular Biology Databases