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LOC4343719 protein BZR1 homolog 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343719, updated on 16-Jul-2024
Gene symbol
LOC4343719
Gene description
protein BZR1 homolog 1-like
Locus tag
OSNPB_070580500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BZR1; OsBZR1; OsJ_24880
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Try the new Transcripts and proteins table
See LOC4343719 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23713460..23714834, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23483968..23485531, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343718 Neighboring gene uncharacterized LOC107276325 Neighboring gene uncharacterized LOC4343720 Neighboring gene uncharacterized LOC107276239

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.). Zhu X, et al. Plant Mol Biol, 2021 Mar. PMID 33387175
  2. The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression. Wang H, et al. Plant J, 2020 Oct. PMID 33617099
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression.
    Title: The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression.
  2. Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.).
    Title: Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.).
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein BZR1 homolog 1
Names
LOC_Os07g39220
P0453G03.22
Protein BRASSINAZOLE-RESISTANT 1 homolog 1
putative mature anther-specific protein LAT61

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422245.1 → NP_001409174.1  protein BZR1 homolog 1

    Status: VALIDATED

    Source sequence(s)
    AK106748, AU076221, CI437915
    UniProtKB/Swiss-Prot
    A0A0P0X7Z8, B8B7S5, Q0D559, Q7XI96

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    23713460..23714834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XI96.1 GenPept UniProtKB/Swiss-Prot:Q7XI96

Gene LinkOut

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Molecular Biology Databases
Research Materials