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LOC4343706 glucan endo-1,3-beta-glucosidase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343706, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343706
Gene description
glucan endo-1,3-beta-glucosidase 4
Locus tag
OSNPB_070577300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4343706 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23573597..23578125)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23343639..23348726)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like Neighboring gene probable histidine kinase 4 Neighboring gene constitutive photomorphogenesis protein 10 Neighboring gene uncharacterized LOC4343708

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4
Names
Os07g0577300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    23573597..23578125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791667.3 → XP_015647153.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A0P0X844, B7F9R0, B8B7R5, Q0D572
    Conserved Domains (2) summary
    smart00768
    Location:368 → 453
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 352
    Glyco_hydro; Glycosyl hydrolases

  2. XM_015791668.3 → XP_015647154.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A0P0X844, B7F9R0, B8B7R5, Q0D572
    Conserved Domains (2) summary
    smart00768
    Location:368 → 453
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 352
    Glyco_hydro; Glycosyl hydrolases

  3. XM_015791669.3 → XP_015647155.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A0P0X844, B7F9R0, B8B7R5, Q0D572
    Conserved Domains (2) summary
    smart00768
    Location:368 → 453
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 352
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
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