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LOC4343620 40S ribosomal protein S11 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343620, updated on 9-Aug-2018

Summary

Gene symbol
LOC4343620
Gene description
40S ribosomal protein S11
Locus tag
OSNPB_070565000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1112_E08.122; OJ1773_H01.103
Expression
Ubiquitous expression in flower buds (RPKM 319.8), flowers (RPKM 200.8) and 6 other tissues See more

Genomic context

See LOC4343620 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22654637..22656603, complement)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 5 Neighboring gene uncharacterized LOC4343619 Neighboring gene 40S ribosomal protein S11 Neighboring gene CCR4-NOT transcription complex subunit 9

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4343620 gene: The LOC4343620 gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
40S ribosomal protein S11
Names
Os07g0565000
putative 40S ribosomal protein S11

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22654637..22656603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791498.2XP_015646984.1  40S ribosomal protein S11

    UniProtKB/TrEMBL
    Q7XIK5
    Conserved Domains (3) summary
    PRK08572
    Location:37144
    rps17p; 30S ribosomal protein S17P; Reviewed
    pfam00366
    Location:74142
    Ribosomal_S17; Ribosomal protein S17
    pfam16205
    Location:472
    Ribosomal_S17_N; Ribosomal_S17 N-terminal
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