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LOC4343249 beta-ureidopropionase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343249, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4343249
Gene description
beta-ureidopropionase
Locus tag
OSNPB_070485100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1753_E03.112
Expression
Ubiquitous expression in roots before flowering (RPKM 26.2), milk grains (RPKM 23.0) and 6 other tissues See more
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Genomic context

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See LOC4343249 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17986490..17989655, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17820566..17823750, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB4-like Neighboring gene adenine phosphoribosyltransferase 4 Neighboring gene probable trehalose-phosphate phosphatase 10 Neighboring gene uncharacterized LOC107281691 Neighboring gene asparagine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene WAT1-related protein At5g47470

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-ureidopropionase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in beta-alanine biosynthetic process via 3-ureidopropionate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-ureidopropionase
Names
Os07g0485100
putative beta-alanine synthases
NP_001409090.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422161.1 → NP_001409090.1  beta-ureidopropionase

    Status: VALIDATED

    Source sequence(s)
    AU093486, CB658898, CB672759, CF297216, CI247310, CI389166
    UniProtKB/TrEMBL
    B9FX93, Q0D6F3, Q8H530

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    17986490..17989655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version