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LOC4343070 photosystem I reaction center subunit IV, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343070, updated on 3-Dec-2024
Gene symbol
LOC4343070
Gene description
photosystem I reaction center subunit IV, chloroplastic
Locus tag
OSNPB_070435300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4343070 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (14689947..14691034)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14533284..14534362)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 1B, chloroplastic Neighboring gene 26S proteasome non-ATPase regulatory subunit 8 homolog A Neighboring gene ribosome biogenesis protein BOP1 homolog Neighboring gene histone-lysine N-methyltransferase family member SUVH2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of photosystem I reaction center IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem I reaction center subunit IV, chloroplastic
Names
Os07g0435300
P0673E01.25
putative Photosystem I reaction center subunit IV

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422118.1 → NP_001409047.1  photosystem I reaction center subunit IV, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AU095651, C24946, CA758714, CB681950, CI512735, CI569938
    UniProtKB/TrEMBL
    A2YKQ6, A3BJ59, Q6Z3V7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    14689947..14691034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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