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LOC4342978 protein PIN-LIKES 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342978, updated on 3-Dec-2024
Gene symbol
LOC4342978
Gene description
protein PIN-LIKES 7
Locus tag
OSNPB_070300200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1114D08.4; B1114D08.5
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See LOC4342978 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11962580..11965684)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11845795..11851820)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g26782, mitochondrial Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene pentatricopeptide repeat-containing protein At1g63330-like Neighboring gene uncharacterized LOC136357365 Neighboring gene aspartokinase 2, chloroplastic

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to cytosol auxin transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
LOW QUALITY PROTEIN: protein PIN-LIKES 7
Names
B1032F05.34
B1032F05.35
Os07g0300200
auxin efflux carrier protein -like
auxin efflux carrier protein family-like protein
pentatricopeptide repeat-containing protein At1g63330
putative fertility restorer homologue

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    11962580..11965684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792017.3 → XP_015647503.2  LOW QUALITY PROTEIN: protein PIN-LIKES 7

    UniProtKB/TrEMBL
    B8BEC9
Nucleotide Protein
Heading Accession and Version

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