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LOC4342570 bZIP transcription factor RISBZ1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342570, updated on 4-Oct-2018

Summary

Gene symbol
LOC4342570
Gene description
bZIP transcription factor RISBZ1-like
Locus tag
OSNPB_070182000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RISBZ1; OJ1014_E09.42
Expression
Biased expression in milk grains (RPKM 53.3) and mature seeds (RPKM 5.9) See more

Genomic context

See LOC4342570 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4322231..4326730, complement)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268726 Neighboring gene guanylate-binding protein 5 Neighboring gene uncharacterized LOC4342569 Neighboring gene tryptophan synthase alpha chain Neighboring gene transcription factor UNE12

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
DNA binding RCA
inferred from Reviewed Computational Analysis
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated RCA
inferred from Reviewed Computational Analysis
more info
 
Component Evidence Code Pubs
nucleus RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
bZIP transcription factor RISBZ1-like
Names
Os07g0182000
RISBZ1 ,transcriptional activator
regulatory protein opaque-2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    4322231..4326730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789930.2XP_015645416.1  bZIP transcription factor RISBZ1-like isoform X1

    UniProtKB/Swiss-Prot
    Q6ZLB0
    Conserved Domains (1) summary
    pfam12498
    Location:305410
    bZIP_C; Basic leucine-zipper C terminal
  2. XM_026026643.1XP_025882428.1  bZIP transcription factor RISBZ1-like isoform X2

RNA

  1. XR_003243220.1 RNA Sequence

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