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LOC4342248 casein kinase II subunit alpha-2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342248, updated on 3-Jun-2019

Summary

Gene symbol
LOC4342248
Gene description
casein kinase II subunit alpha-2
Locus tag
OSNPB_070114400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1513_F02.134
Expression
Ubiquitous expression in leaves before flowering (RPKM 68.9), flower buds (RPKM 66.5) and 6 other tissues See more

Genomic context

See LOC4342248 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (799529..805187, complement)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 61 Neighboring gene uncharacterized protein At2g23090 Neighboring gene uncharacterized LOC4342249 Neighboring gene uncharacterized LOC4342250

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

  • Circadian rhythm - plant, organism-specific biosystem (from KEGG)
    Circadian rhythm - plant, organism-specific biosystemThe circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this sys...
  • Circadian rhythm - plant, conserved biosystem (from KEGG)
    Circadian rhythm - plant, conserved biosystemThe circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this sys...
  • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...

General gene information

Homology

General protein information

Preferred Names
casein kinase II subunit alpha-2
Names
Os07g0114400
casein kinase II alpha subunit
casein kinase II subunit alpha

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    799529..805187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791401.2XP_015646887.1  casein kinase II subunit alpha-2

    UniProtKB/TrEMBL
    Q8H386
    Conserved Domains (2) summary
    cd14132
    Location:15319
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:34319
    Pkinase; Protein kinase domain
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