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LOC4342176 tobamovirus multiplication protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342176, updated on 12-Jul-2024
Gene symbol
LOC4342176
Gene description
tobamovirus multiplication protein 1
Locus tag
OSNPB_070102400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (154671..157708, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (147140..150186, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342174 Neighboring gene uncharacterized GPI-anchored protein At1g61900 Neighboring gene la-related protein 6C Neighboring gene uncharacterized LOC4342178

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plant-type vacuole membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
tobamovirus multiplication protein 1
Names
B1026C12.34
Os07g0102400
putative transmembrane protein(TOM3)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    154671..157708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789264.3 → XP_015644750.1  tobamovirus multiplication protein 1

    UniProtKB/TrEMBL
    B8B6I6, B9FV38, Q69L84
    Conserved Domains (1) summary
    pfam06454
    Location:15 → 284
    DUF1084; Protein of unknown function (DUF1084)
Nucleotide Protein
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