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LOC4341997 delta-aminolevulinic acid dehydratase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341997, updated on 3-Dec-2024
Gene symbol
LOC4341997
Gene description
delta-aminolevulinic acid dehydratase, chloroplastic-like
Locus tag
OSNPB_060704600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HEMB; ALADH; OsJ_22561; P0018H04.2
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See LOC4341997 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30626211..30630508, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29757542..29761832, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341995 Neighboring gene leucine-rich repeat extensin-like protein 2 Neighboring gene protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic Neighboring gene probable histone acetyltransferase HAC-like 2 Neighboring gene probable histone acetyltransferase HAC-like 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables porphobilinogen synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
delta-aminolevulinic acid dehydratase, chloroplastic
Names
LOC_Os06g49110
Porphobilinogen synthase
putative aminolevulinate dehydratase
NP_001389872.1
NP_001389873.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402943.1 → NP_001389872.1  delta-aminolevulinic acid dehydratase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    CB670186, CI136575, CI658329, CI674064
    UniProtKB/Swiss-Prot
    A0A0P0X108, Q5Z8V9
    UniProtKB/TrEMBL
    A2YGS3

  2. NM_001402944.1 → NP_001389873.1  delta-aminolevulinic acid dehydratase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AU092848, CB649881, CB652077, CB652078, CB656549
    UniProtKB/Swiss-Prot
    A0A0P0X108, Q5Z8V9
    UniProtKB/TrEMBL
    A2YGS3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    30626211..30630508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5Z8V9.1 GenPept UniProtKB/Swiss-Prot:Q5Z8V9

Gene LinkOut

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Molecular Biology Databases
Research Materials