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LOC4341940 xyloglucan endotransglucosylase/hydrolase protein 22 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341940, updated on 16-Jun-2026
Gene symbol
LOC4341940
Gene description
xyloglucan endotransglucosylase/hydrolase protein 22
Locus tag
OSNPB_060696400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4341940 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29999779..30001246)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29133006..29134600)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL43 Neighboring gene uncharacterized LOC112939291 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene xyloglucan endotransglucosylase protein 7

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
xyloglucan endotransglucosylase/hydrolase protein 22
Names
Os06g0696400
P0028E05.17-1
P0028E05.17-2
P0622F03.43-1
P0622F03.43-2
putative xyloglucan endotransglycosylase
xyloglucan endotransglycosylase-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    29999779..30001246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785621.3 → XP_015641107.1  xyloglucan endotransglucosylase/hydrolase protein 22

    UniProtKB/TrEMBL
    A2YGK9, B7EXC6, Q5Z6H3, Q5Z8G6
    Conserved Domains (1) summary
    cd02176
    Location:20 → 290
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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