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LOC4341679 transcription initiation factor TFIID subunit 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341679, updated on 12-Jul-2024
Gene symbol
LOC4341679
Gene description
transcription initiation factor TFIID subunit 5
Locus tag
OSNPB_060649500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0453H04.6
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See LOC4341679 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27393249..27401968)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26529305..26538075)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene WRKY transcription factor WRKY28-like Neighboring gene uncharacterized LOC9269806 Neighboring gene cytochrome b561, DM13 and DOMON domain-containing protein At5g54830

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcription initiation factor TFIID subunit 5
Names
OSJNBa0062J02.37
Os06g0649500
putative TAF5

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27393249..27401968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788606.3 → XP_015644092.1  transcription initiation factor TFIID subunit 5

    UniProtKB/TrEMBL
    A0A0P0WZB6, Q0DAJ2, Q67UR9
    Conserved Domains (3) summary
    cd00200
    Location:402 → 649
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:341 → 404
    7WD40; WD40 repeat [structural motif]
    pfam04494
    Location:50 → 174
    TFIID_NTD2; WD40 associated region in TFIID subunit, NTD2 domain
Nucleotide Protein
Heading Accession and Version

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