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LOC4341637 proteasome subunit beta type-3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341637, updated on 3-Dec-2024
Gene symbol
LOC4341637
Gene description
proteasome subunit beta type-3-like
Locus tag
OSNPB_060643100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PBC1; OsPBC1; OsJ_22127
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See LOC4341637 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27063171..27066688, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26199533..26202843, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341635 Neighboring gene PX domain-containing protein EREL1 Neighboring gene ESCRT-related protein CHMP1-like Neighboring gene 36.4 kDa proline-rich protein

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Primary structural features of the 20S proteasome subunits of rice (Oryza sativa). Sassa H, et al. Gene, 2000 May 30. PMID 10854779
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex, beta-subunit complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
proteasome subunit beta type-3
Names
20S proteasome alpha subunit C
20S proteasome subunit beta type 3
20S proteasome subunit beta-3
LOC_Os06g43570
P0416A11.24
beta 3 subunit of 20S proteasome
NP_001408588.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421659.1 → NP_001408588.1  proteasome subunit beta type-3

    Status: VALIDATED

    Source sequence(s)
    CI394024, CV729357, CV729358
    UniProtKB/Swiss-Prot
    A0A0P0WZ61, Q0DAN3, Q67WV4, Q9LST7
    UniProtKB/TrEMBL
    A2X1N4, A3A3U3, B8B0S6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27063171..27066688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LST7.1 GenPept UniProtKB/Swiss-Prot:Q9LST7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials