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LOC4341512 pentatricopeptide repeat-containing protein At1g03540 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341512, updated on 16-Jun-2026
Gene symbol
LOC4341512
Gene description
pentatricopeptide repeat-containing protein At1g03540
Locus tag
OSNPB_060611200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25227644..25234978, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24368905..24372948, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene aspartyl protease family protein At5g10770 Neighboring gene 65-kDa microtubule-associated protein 1 Neighboring gene protein IQ-DOMAIN 33 Neighboring gene uncharacterized LOC112939329 Neighboring gene uncharacterized LOC107281333 Neighboring gene exopolygalacturonase

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pentatricopeptide repeat-containing protein At1g03540
Names
Os06g0611200
P0490F09.35
pentatricopeptide (PPR) repeat-containing protein-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    25227644..25234978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311562.1 → XP_066167659.1  pentatricopeptide repeat-containing protein At1g03540

    UniProtKB/TrEMBL
    A2YEY4
Nucleotide Protein
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