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LOC4341464 DNA-directed RNA polymerase III subunit RPC6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341464, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4341464
Gene description
DNA-directed RNA polymerase III subunit RPC6
Locus tag
OSNPB_060603400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 3.3), flower buds (RPKM 3.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24722491..24726523, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23870661..23874769, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene protein MKS1 Neighboring gene SPX domain-containing protein 1-like Neighboring gene uncharacterized LOC136356903

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC6
Names
Os06g0603400
P0486H12.36-1
NP_001408574.1
XP_066167257.1
XP_066167258.1
XP_066167259.1
XP_066167260.1
XP_066167261.1
XP_066167262.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421645.1 → NP_001408574.1  DNA-directed RNA polymerase III subunit RPC6

    Status: VALIDATED

    Source sequence(s)
    AK060002, AK106905, CI004611
    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1

RNA

  1. NR_185319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK060002, AK106905

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    24722491..24726523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066311165.1 → XP_066167262.1  DNA-directed RNA polymerase III subunit RPC6 isoform X1

    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1

  2. XM_066311163.1 → XP_066167260.1  DNA-directed RNA polymerase III subunit RPC6 isoform X1

    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1

  3. XM_066311164.1 → XP_066167261.1  DNA-directed RNA polymerase III subunit RPC6 isoform X1

    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1

  4. XM_066311162.1 → XP_066167259.1  DNA-directed RNA polymerase III subunit RPC6 isoform X1

    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1

  5. XM_066311161.1 → XP_066167258.1  DNA-directed RNA polymerase III subunit RPC6 isoform X1

    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1

  6. XM_066311160.1 → XP_066167257.1  DNA-directed RNA polymerase III subunit RPC6 isoform X1

    UniProtKB/TrEMBL
    A3BDD0, Q69XJ1
Nucleotide Protein
Heading Accession and Version

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