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LOC4341311 protein SHORT ROOT IN SALT MEDIUM 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341311, updated on 17-Jul-2024
Gene symbol
LOC4341311
Gene description
protein SHORT ROOT IN SALT MEDIUM 1
Locus tag
OSNPB_060562700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 6
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22465553..22475826, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21606865..21617147, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain protein 1 Neighboring gene T-complex protein 1 subunit epsilon Neighboring gene protein NDL1 Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein SHORT ROOT IN SALT MEDIUM 1
Names
ATP/GTP-binding protein-like
Os06g0562700
P0656E03.13
P0656E03.14
calmodulin-like
cell division cycle and apoptosis regulator protein 1

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22465553..22475826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787757.3 → XP_015643243.1  protein SHORT ROOT IN SALT MEDIUM 1

    UniProtKB/TrEMBL
    B8B3S4
    Conserved Domains (4) summary
    pfam06459
    Location:794 → 939
    RR_TM4-6; Ryanodine Receptor TM 4-6
    pfam13405
    Location:1308 → 1337
    EF-hand_6; EF-hand domain
    pfam13499
    Location:1309 → 1364
    EF-hand_7; EF-hand domain pair
    pfam14443
    Location:554 → 668
    DBC1; DBC1
Nucleotide Protein
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