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LOC4341302 solute carrier family 40 member 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341302, updated on 3-Dec-2024
Gene symbol
LOC4341302
Gene description
solute carrier family 40 member 1-like
Locus tag
OSNPB_060560000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4341302 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22255495..22258044)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21396830..21399402)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein OXIDATIVE STRESS 3 Neighboring gene acid phosphatase 1 Neighboring gene uncharacterized LOC136356838 Neighboring gene NAC domain-containing protein 75 Neighboring gene deSI-like protein At4g17486

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in iron ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
solute carrier family 40 member 1
Names
LOC_Os06g36450
P0528E12.13
putative SLC11A3 iron transporter

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421962.1 → NP_001408891.1  solute carrier family 40 member 1

    Status: VALIDATED

    Source sequence(s)
    AK063490, CI096411, CI099114
    UniProtKB/Swiss-Prot
    A0A0P0WXZ5, Q5Z922
    UniProtKB/TrEMBL
    A2YE27

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22255495..22258044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786169.3 → XP_015641655.1  solute carrier family 40 member 1 isoform X1

    UniProtKB/TrEMBL
    A2YE27
    Conserved Domains (1) summary
    pfam06963
    Location:21 → 396
    FPN1; Ferroportin1 (FPN1)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5Z922.1 GenPept UniProtKB/Swiss-Prot:Q5Z922

Gene LinkOut

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Molecular Biology Databases
Research Materials