U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4341131 pentatricopeptide repeat-containing protein At3g53360, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341131, updated on 16-Jun-2026
Gene symbol
LOC4341131
Gene description
pentatricopeptide repeat-containing protein At3g53360, mitochondrial
Locus tag
OSNPB_060506100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4341131 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (18847201..18857781)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (17997643..18008358)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene plastid division protein PDV1 Neighboring gene UDP-xylose transporter 1 Neighboring gene ubiquitin-conjugating enzyme E2-17 kDa Neighboring gene uncharacterized LOC9271604

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pentatricopeptide repeat-containing protein At3g53360, mitochondrial
Names
OSJNBb0026G06.14
Os06g0506100
Os06g0506150
putative pentatricopeptide (PPR) repeat-containing protein

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    18847201..18857781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787806.3 → XP_015643292.1  pentatricopeptide repeat-containing protein At3g53360, mitochondrial

    UniProtKB/TrEMBL
    A2YDE0, Q654C7
    Conserved Domains (2) summary
    PLN03077
    Location:47 → 738
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:525 → 552
    PPR; PPR repeat [structural motif]

  2. XM_026026479.2 → XP_025882264.1  pentatricopeptide repeat-containing protein At3g53360, mitochondrial

    UniProtKB/TrEMBL
    A2YDE0, Q654C7
    Conserved Domains (2) summary
    PLN03077
    Location:47 → 738
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:525 → 552
    PPR; PPR repeat [structural motif]

  3. XM_026026467.2 → XP_025882252.1  pentatricopeptide repeat-containing protein At3g53360, mitochondrial

    UniProtKB/TrEMBL
    A2YDE0, Q654C7
    Conserved Domains (2) summary
    PLN03077
    Location:47 → 738
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:525 → 552
    PPR; PPR repeat [structural motif]

  4. XM_015787797.3 → XP_015643283.1  pentatricopeptide repeat-containing protein At3g53360, mitochondrial

    UniProtKB/TrEMBL
    A2YDE0, Q654C7
    Conserved Domains (2) summary
    PLN03077
    Location:47 → 738
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:525 → 552
    PPR; PPR repeat [structural motif]

RNA

  1. XR_010741859.1 RNA Sequence

  2. XR_010741858.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials