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LOC4340651 pentatricopeptide repeat-containing protein At3g61520, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340651, updated on 12-Jul-2024
Gene symbol
LOC4340651
Gene description
pentatricopeptide repeat-containing protein At3g61520, mitochondrial
Locus tag
OSNPB_060249500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4340651 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7933756..7938814, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7764924..7770055, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 21 Neighboring gene uncharacterized LOC107277464 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC136356844 Neighboring gene uncharacterized LOC112939318

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pentatricopeptide repeat-containing protein At3g61520, mitochondrial
Names
OSJNBa0091G06.22
Os06g0249500
putative pentatricopeptide repeat-containing protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    7933756..7938814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785726.3 → XP_015641212.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

    Conserved Domains (3) summary
    PLN03218
    Location:139 → 506
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:425 → 452
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:491 → 538
    PPR_2; PPR repeat family

  2. XM_015785731.3 → XP_015641217.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

    Conserved Domains (3) summary
    PLN03218
    Location:139 → 506
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:425 → 452
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:491 → 538
    PPR_2; PPR repeat family

  3. XM_015785730.3 → XP_015641216.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

    Conserved Domains (3) summary
    PLN03218
    Location:139 → 506
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:425 → 452
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:491 → 538
    PPR_2; PPR repeat family

  4. XM_015785724.3 → XP_015641210.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

    Conserved Domains (3) summary
    PLN03218
    Location:139 → 506
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:425 → 452
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:491 → 538
    PPR_2; PPR repeat family

  5. XM_015785728.3 → XP_015641214.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

    Conserved Domains (3) summary
    PLN03218
    Location:139 → 506
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:425 → 452
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:491 → 538
    PPR_2; PPR repeat family

  6. XM_066311914.1 → XP_066168011.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

  7. XM_015785727.3 → XP_015641213.1  pentatricopeptide repeat-containing protein At3g61520, mitochondrial

    Conserved Domains (3) summary
    PLN03218
    Location:139 → 506
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:425 → 452
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:491 → 538
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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