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LOC4340613 protein JINGUBANG [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340613, updated on 12-Jul-2024
Gene symbol
LOC4340613
Gene description
protein JINGUBANG
Locus tag
OSNPB_060238700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (7378613..7380667, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7210830..7212911, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein ACCELERATED CELL DEATH 6 Neighboring gene uncharacterized LOC112939231 Neighboring gene uncharacterized LOC4340614 Neighboring gene uncharacterized LOC112936043

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein JINGUBANG
Names
OSJNBa0052G07.13
OSJNBa0068B06.22
Os06g0238700
transducin family protein-like
vegetative incompatibility protein HET-E-1

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    7378613..7380667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787014.3 → XP_015642500.1  protein JINGUBANG

    UniProtKB/TrEMBL
    A0A0P0WUH4, A2YB46
    Conserved Domains (2) summary
    sd00039
    Location:38 → 88
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:26 → 393
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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