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LOC4340573 pentatricopeptide repeat-containing protein At5g06540 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340573, updated on 16-Jun-2026
Gene symbol
LOC4340573
Gene description
pentatricopeptide repeat-containing protein At5g06540
Locus tag
OSNPB_060231400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6964586..6966636, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6796578..6798904, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281428 Neighboring gene casparian strip membrane protein 3 Neighboring gene pentatricopeptide repeat-containing protein At5g15300 Neighboring gene protein BOBBER 1 Neighboring gene NEP1-interacting protein-like 2 Neighboring gene uncharacterized protein At5g39570

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pentatricopeptide repeat-containing protein At5g06540
Names
Os06g0231400
P0525F01.38
pentatricopeptide (PPR) repeat-containing protein-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    6964586..6966636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785506.3 → XP_015640992.3  pentatricopeptide repeat-containing protein At5g06540

    UniProtKB/TrEMBL
    A2YAZ5, Q67X36
Nucleotide Protein
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