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LOC4340177 protein SEEDLING PLASTID DEVELOPMENT 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340177, updated on 16-Jun-2026
Gene symbol
LOC4340177
Gene description
protein SEEDLING PLASTID DEVELOPMENT 1
Locus tag
OSNPB_060155600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0046E09.6
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See LOC4340177 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3023672..3027955)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2863416..2867706)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein IQ-DOMAIN 9 Neighboring gene tetrahydroanabasine acetyltransferase Neighboring gene uncharacterized LOC4340175 Neighboring gene uncharacterized LOC107278615 Neighboring gene uncharacterized LOC4340178

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein SEEDLING PLASTID DEVELOPMENT 1
Names
ATPase-like
OSJNBa0085L11.28
Os06g0155600

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    3023672..3027955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787414.2 → XP_015642900.1  protein SEEDLING PLASTID DEVELOPMENT 1

    UniProtKB/TrEMBL
    A2Y9J1, Q5VMB3
    Conserved Domains (2) summary
    cd02645
    Location:540 → 599
    R3H_AAA; R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is ...
    cl38985
    Location:63 → 345
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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