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LOC4340156 B-box zinc finger protein 22 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340156, updated on 12-Jul-2024
Gene symbol
LOC4340156
Gene description
B-box zinc finger protein 22
Locus tag
OSNPB_060152200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4340156 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2853818..2857830)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2695267..2699599)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerophosphate phosphatase PTPMT2 Neighboring gene profilin LP04-like Neighboring gene ubiquinone biosynthesis O-methyltransferase, mitochondrial Neighboring gene ubiquinone biosynthesis O-methyltransferase, mitochondrial

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Isolation and mapping of a family of putative zinc-finger protein cDNAs from rice. Song J, et al. DNA Res, 1998 Apr 30. PMID 9679197
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
B-box zinc finger protein 22
Names
Os06g0152200
P0529C07.33
P0710H01.45
zinc-finger protein R2931

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    2853818..2857830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788847.3 → XP_015644333.1  B-box zinc finger protein 22

    UniProtKB/TrEMBL
    A2Y9G2, A3B8G7, O82116, Q0DEH5
    Conserved Domains (1) summary
    cd19821
    Location:5 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
Nucleotide Protein
Heading Accession and Version

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