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LOC4339967 probable transcriptional regulator SLK3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339967, updated on 16-Jun-2026
Gene symbol
LOC4339967
Gene description
probable transcriptional regulator SLK3
Locus tag
OSNPB_060126000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4339967 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1546237..1551475, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1389081..1394566, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g08510 Neighboring gene uncharacterized LOC136356945 Neighboring gene E3 ubiquitin-protein ligase BIG BROTHER Neighboring gene probable receptor-like protein kinase At2g21480 Neighboring gene uncharacterized LOC4339970

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable transcriptional regulator SLK3
Names
Os06g0126000
P0425F02.34-1
P0425F02.34-2
putative SEU1 protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    1546237..1551475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026115.2 → XP_025881900.1  probable transcriptional regulator SLK3

    UniProtKB/TrEMBL
    Q9LWV8
    Conserved Domains (1) summary
    pfam01803
    Location:234 → 493
    LIM_bind; LIM-domain binding protein
Nucleotide Protein
Heading Accession and Version

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