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LOC4339763 probable protein phosphatase 2C 52 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339763, updated on 3-Dec-2024
Gene symbol
LOC4339763
Gene description
probable protein phosphatase 2C 52
Locus tag
OSNPB_050587100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsPP2C52; OsJ_000225; OJ1007_H05.6
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Try the new Transcripts and proteins table
See LOC4339763 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29430284..29435301, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29244082..29249102, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g01030, mitochondrial Neighboring gene probable polygalacturonase Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 Neighboring gene TPR repeat-containing thioredoxin TTL1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-threonine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable protein phosphatase 2C 52
Names
LOC_Os05g50970
NP_001407857.1
XP_025881279.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420928.1 → NP_001407857.1  probable protein phosphatase 2C 52

    Status: VALIDATED

    Source sequence(s)
    AK101645
    UniProtKB/Swiss-Prot
    A0A0P0WR20, Q6L5C4
    UniProtKB/TrEMBL
    A2Y814

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    29430284..29435301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025494.2 → XP_025881279.1  probable protein phosphatase 2C 52 isoform X1

    Conserved Domains (1) summary
    cd00143
    Location:1 → 234
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6L5C4.1 GenPept UniProtKB/Swiss-Prot:Q6L5C4

Gene LinkOut

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Research Materials