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LOC4339610 homeobox-DDT domain protein RLT2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339610, updated on 12-Jul-2024
Gene symbol
LOC4339610
Gene description
homeobox-DDT domain protein RLT2
Locus tag
OSNPB_050562400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28160428..28171532, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27975661..27987032, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19-like Neighboring gene dnaJ homolog subfamily B member 4 Neighboring gene protein DMP6 Neighboring gene NAC domain-containing protein 73

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
homeobox-DDT domain protein RLT2
Names
Os05g0562400

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    28160428..28171532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783915.3 → XP_015639401.1  homeobox-DDT domain protein RLT2 isoform X2

    Conserved Domains (8) summary
    pfam00046
    Location:59 → 112
    Homeobox; Homeobox domain
    pfam02791
    Location:619 → 674
    DDT; DDT domain
    pfam05066
    Location:796 → 863
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam12474
    Location:422 → 567
    PKK; Polo kinase kinase
    pfam15612
    Location:1019 → 1064
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15614
    Location:1236 → 1274
    WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    cd16269
    Location:524 → 535
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:440 → 556
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_015783914.3 → XP_015639400.1  homeobox-DDT domain protein RLT2 isoform X1

    Conserved Domains (8) summary
    pfam00046
    Location:59 → 112
    Homeobox; Homeobox domain
    pfam02791
    Location:619 → 674
    DDT; DDT domain
    pfam05066
    Location:796 → 863
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam12474
    Location:422 → 567
    PKK; Polo kinase kinase
    pfam15612
    Location:1019 → 1064
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15614
    Location:1236 → 1274
    WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    cd16269
    Location:524 → 535
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:440 → 556
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
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