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LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339593, updated on 6-Sep-2025
Gene symbol
LOC4339593
Gene description
photosystem I reaction center subunit VI, chloroplastic-like
Locus tag
OSNPB_050560000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GOS5; PSAH; PSI-H; OsJ_19524; OsJ_018737; OJ1115_B06.3
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See LOC4339593 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28063400..28064381)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27878561..27879587)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene golgin candidate 5 Neighboring gene rop guanine nucleotide exchange factor 9 Neighboring gene protein DOG1-like 3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of photosystem I reaction center IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem I reaction center subunit VI, chloroplastic
Names
LOC_Os05g48630
Light-harvesting complex I 11 kDa protein
OSJNBa0001A14.18
Protein GOS5
photosystem-1 H subunit GOS5

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402632.1 → NP_001389561.1  photosystem I reaction center subunit VI, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AU057141, AU101880, AU197891, CF335933
    UniProtKB/Swiss-Prot
    A2Y7D9, A6N1C5, B7E4T5, P22181, Q0DG05, Q6AT29, Q9SBB9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    28063400..28064381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DG05.1 GenPept UniProtKB/Swiss-Prot:Q0DG05

Gene LinkOut

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Molecular Biology Databases
Research Materials