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LOC4339573 60S ribosomal protein L37a-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339573, updated on 16-Jul-2024
Gene symbol
LOC4339573
Gene description
60S ribosomal protein L37a-1-like
Locus tag
OSNPB_050557000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_018715; OJ1214_E03.13
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See LOC4339573 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27869573..27871640)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27699715..27701840)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable purine permease 4 Neighboring gene large ribosomal subunit protein eL33z Neighboring gene aspartic proteinase NANA, chloroplast Neighboring gene uncharacterized LOC4339575

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
large ribosomal subunit protein eL43y
Names
60S ribosomal protein L37a
60S ribosomal protein L37a-2
LOC_Os05g48320

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402626.1 → NP_001389555.1  large ribosomal subunit protein eL43y isoform 1

    Status: VALIDATED

    Source sequence(s)
    CI208237, CV731046
    UniProtKB/Swiss-Prot
    A2ZWJ4, B7E3N1, P0DKK1, P0DKK2, Q0JKE6, Q5QM99, Q6I606
    UniProtKB/TrEMBL
    A2Y7B6

  2. NM_001402627.1 → NP_001389556.1  large ribosomal subunit protein eL43y isoform 2

    Status: VALIDATED

    Source sequence(s)
    AP014961, CI208237, CV731046

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    27869573..27871640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DKK2.1 GenPept UniProtKB/Swiss-Prot:P0DKK2

Gene LinkOut

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Molecular Biology Databases
Research Materials