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LOC4339270 photosystem II reaction center W protein, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339270, updated on 17-Jul-2024
Gene symbol
LOC4339270
Gene description
photosystem II reaction center W protein, chloroplastic-like
Locus tag
OSNPB_050508900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4339270 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (25308973..25310871)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25193431..25194718)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356689 Neighboring gene TNF receptor-associated factor homolog 1a Neighboring gene calmodulin calcium-dependent NAD kinase Neighboring gene uncharacterized LOC107281115 Neighboring gene uncharacterized LOC112939010

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of photosystem II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem II reaction center W protein, chloroplastic-like
Names
Os05g0508900

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    25308973..25310871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784375.3 → XP_015639861.1  photosystem II reaction center W protein, chloroplastic-like

    Conserved Domains (1) summary
    cl06243
    Location:14 → 128
    PsbW; Photosystem II reaction centre W protein (PsbW)
Nucleotide Protein
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