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LOC4339242 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339242, updated on 12-Jul-2024
Gene symbol
LOC4339242
Gene description
probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
Locus tag
OSNPB_050502200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4339242 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24839356..24842301)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24724315..24727260)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated ion channel 4 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA aspartic acid (anticodon GUC)

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
Names
Os05g0502200

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    24839356..24842301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782821.3 → XP_015638307.1  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1

    UniProtKB/TrEMBL
    A0A0N7KL18, Q60EI7
    Conserved Domains (1) summary
    PLN02510
    Location:24 → 397
    PLN02510; probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

  2. XM_015782820.2 → XP_015638306.1  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1

    UniProtKB/TrEMBL
    A0A0N7KL18, Q60EI7
    Conserved Domains (1) summary
    PLN02510
    Location:24 → 397
    PLN02510; probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

  3. XM_066311084.1 → XP_066167181.1  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X2

Nucleotide Protein
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