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LOC4339042 uncharacterized LOC4339042 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339042, updated on 12-Jul-2024
Gene symbol
LOC4339042
Gene description
uncharacterized LOC4339042
Locus tag
OSNPB_050465100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22948594..22955662, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22834979..22842215, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356551 Neighboring gene uncharacterized LOC4339041 Neighboring gene uncharacterized LOC4339043 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Homology

Preferred Names
uncharacterized protein LOC4339042
Names
Os05g0465100
ecotropic viral integration site 5 protein homolog

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    22948594..22955662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785023.3 → XP_015640509.1  uncharacterized protein LOC4339042

    UniProtKB/TrEMBL
    A2Y5J3, B9FJJ6, Q6I5K0
    Conserved Domains (2) summary
    smart00164
    Location:191 → 421
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    COG1196
    Location:546 → 675
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. XR_001546271.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials