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LOC4338781 bZIP transcription factor 39-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338781, updated on 9-Aug-2018

Summary

Gene symbol
LOC4338781
Gene description
bZIP transcription factor 39-like
Locus tag
OSNPB_050411300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 31.8), roots before flowering (RPKM 28.7) and 6 other tissues See more

Genomic context

See LOC4338781 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20112944..20117098, complement)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 3.1 Neighboring gene protein NRT1/ PTR FAMILY 3.1 Neighboring gene uncharacterized protein Cbei_0202 Neighboring gene uncharacterized LOC4338782 Neighboring gene transcription factor MYBC1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
bZIP transcription factor 39
Names
Os05g0411300
bZIP transcription factor 17

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20112944..20117098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784599.2XP_015640085.1  bZIP transcription factor 39

    UniProtKB/Swiss-Prot
    Q6AU90
    Conserved Domains (1) summary
    cd14704
    Location:179226
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain
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