U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AI506816 expressed sequence AI506816 [ Mus musculus (house mouse) ]

Gene ID: 433855, updated on 8-Feb-2024

Summary

Official Symbol
AI506816provided by MGI
Official Full Name
expressed sequence AI506816provided by MGI
Primary source
MGI:MGI:2140929
See related
AllianceGenome:MGI:2140929
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within response to wounding. Is expressed in embryo. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 1.3), liver E14 (RPKM 1.2) and 24 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
5 A3; 5 10.39 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (23897259..23917665, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (23692261..23712667, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 5031425E22 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:22892703-22893070 Neighboring gene STARR-seq mESC enhancer starr_12606 Neighboring gene STARR-seq mESC enhancer starr_12607 Neighboring gene STARR-positive B cell enhancer ABC_E1297 Neighboring gene STARR-positive B cell enhancer ABC_E528 Neighboring gene lysine (K)-specific methyltransferase 2E Neighboring gene serine/arginine-rich protein specific kinase 2 Neighboring gene STARR-seq mESC enhancer starr_12611 Neighboring gene STARR-positive B cell enhancer mm9_chr5:23122338-23122639 Neighboring gene STARR-positive B cell enhancer mm9_chr5:23143262-23143562 Neighboring gene STARR-seq mESC enhancer starr_12614 Neighboring gene STARR-positive B cell enhancer mm9_chr5:23206519-23206819 Neighboring gene STARR-positive B cell enhancer ABC_E8818 Neighboring gene STARR-positive B cell enhancer ABC_E3564 Neighboring gene predicted gene, 42226 Neighboring gene predicted gene, 50451 Neighboring gene STARR-seq mESC enhancer starr_12621 Neighboring gene STARR-positive B cell enhancer ABC_E4745 Neighboring gene pseudouridylate synthase 7 Neighboring gene RAD50 interactor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015554.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC117614
  2. NR_038090.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and lacks two alternate exons compared to variant 1.
    Source sequence(s)
    CJ127083, CJ128682, CJ130089

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    23897259..23917665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)