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LOC4338417 superoxide dismutase [Mn], mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338417, updated on 9-Aug-2018

Summary

Gene symbol
LOC4338417
Gene description
superoxide dismutase [Mn], mitochondrial-like
Locus tag
OSNPB_050323900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
sodA; RMSOD1; sodAOs1; P0018A03; OsJ_18067
Expression
Ubiquitous expression in flower buds (RPKM 235.6), mature seeds (RPKM 225.4) and 6 other tissues See more

Genomic context

See LOC4338417 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (15046735..15051400)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266328 Neighboring gene protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic Neighboring gene transcription factor GTE10 Neighboring gene tRNA (guanine(26)-N(2))-dimethyltransferase

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by Gramene

Component Evidence Code Pubs
mitochondrion RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
superoxide dismutase [Mn], mitochondrial
Names
LOC_Os05g25850
Os05g0323900
manganese-superoxide dismutase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    15046735..15051400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784641.2XP_015640127.1  superoxide dismutase [Mn], mitochondrial

    UniProtKB/Swiss-Prot
    Q43008
    Conserved Domains (3) summary
    PLN02471
    Location:1231
    PLN02471; superoxide dismutase [Mn]
    pfam00081
    Location:33111
    Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
    pfam02777
    Location:121224
    Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain
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